About

About me

Education, appointments, awards, grants and invited lectures

Portrait of Hajime Sato

Hajime SatoSATO Hajime

Associate Professor, The University of Tokyo

Computational Biology Laboratory, Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo

I study the biosynthetic mechanisms of terpenoids and other natural products — and engineer the enzymes behind them — using quantum chemistry, molecular dynamics and machine learning.

Contact:hsato[at]bi.a.u-tokyo.ac.jp (replace [at] with @) researchmap:researchmap.jp/hajimesato

Education

Education

  • 1987 Born in Kofu, Yamanashi, Japan
  • 2006 Kofu Minami High School (Science and Mathematics Course)
  • 2011 B.S. in Pharmaceutical Sciences, Tokyo University of Science
  • 2013 M.S., Graduate School of Pharmaceutical Sciences, The University of Tokyo
  • 2016 Ph.D. in Pharmaceutical Sciences, The University of Tokyo Advisor: Prof. Masanobu Uchiyama
Appointments

Appointments

Awards

Awards

  • 2023 JAICI Award, Japan Association for International Chemical Information
  • 2022 PSJ Award for Young Scientists, Pharmaceutical Society of Japan
  • 2021 Encouragement Award, Division of Pharmacognosy and Natural Products, Pharmaceutical Society of Japan
Grants

Research grants

Amounts and durations are listed on the publications page.

Invited lectures

Invited lectures

  • Dec 15–20, 2025 Pacifichem 2025, Hawaii, USA Biosynthesis of Natural Products and Biomaterials (BIO009)
    “Mechanistic Investigation of Terpene Cyclases using Computational Chemistry and Artificial Intelligence”
  • Aug 29, 2025 1st Japanese–Australasian Symposium on the Biosynthesis of Natural Products, Sydney, Australia “AI-Assisted Computational Study of Terpene Cyclization Mechanism”
  • Aug 4–8, 2025 TERPNET 2025, Brisbane, Australia “AI-Assisted Prediction of Terpene Cyclization Mechanism”
  • Jun 4, 2025 Digital Organic Synthesis Young Researchers Seminar, Iwate University, Japan “Computational analysis of terpene cyclases”
  • Dec 9, 2024 Chemical Society of Japan, Kanto Branch Lecture, University of Yamanashi “Behind the scenes of molecules: discoveries guided by computational chemistry”
  • Nov 25, 2024 Sakigake Project 2024 Seminar, Kanazawa University “Computational chemistry tackling terpene biosynthesis”
  • Jun 13, 2024 Yokohama National University “Molecular design and reaction analysis centred on computational chemistry”
  • Dec 20, 2023 Pharmaceutical Society of Japan, Kanto Branch Online Symposium “Biosynthetic mechanisms of natural products studied by theoretical calculations”
  • Oct 19, 2023 Tokyo University of Science, Faculty of Pharmaceutical Sciences “Biosynthesis of natural products studied by theoretical calculations”
  • Oct 13, 2023 Kofu Minami High School (SSH programme) “Pharmaceutical research: from fundamentals to the frontier”
  • Nov 29, 2021 GTR Chemistry Workshop 2021, Nagoya University “Biosynthesis of natural products studied by theoretical calculations”
  • Jan 29, 2020 RIKEN CSRS Informatics and Data Science Program Symposium “Origin of structural diversity in terpene biosynthesis revealed by computational chemistry”
  • Oct 9, 2018 Young Plant Scientists Meeting, Chiba University “Biosynthesis of lysine-derived alkaloids studied by computation and experiment”
  • Nov 2, 2017 Faculty of Agriculture, The University of Tokyo “Theoretical Studies on Terpene-Forming Carbocation Cyclization/Rearrangement Reactions”
Selected papers

Selected publications

1Enzymatic skeletal editing reaction forming the 1,3,5-triazine core during biosynthesis of the anticancer nucleoside analog 5-azacytidine

A. Umezawa†, T. Tsunoda†, Y. Nakashima†, Y.-L. Wang, T. Yoneda, C. Maruyama, N.-S. Hsu, T. Matsuyama, K. Miyamoto, H. Sato, A. Shimose, R. Takazawa, Y. Hamano, T.-L. Li, Y. Inokuma, M. Uchiyama, Y. Ogasawara*, H. Morita*, T. Dairi*

Nature Catalysis, 2026, accepted.

DOI: 10.1038/s41929-026-01611-x

2Formal Chemoenzymatic Skeletal Editing of Fusicoccane Core to Access 6-Aza-fusicoccanes

Seiya Endo, Eigo Fukuda, Ken-ya Hori, Kei-ichi Murai, Atsushi Nakayama, Yoko Yasuno, Masayoshi Arai, Hajime Sato, Tomohisa Kuzuyama, Tetsuro Shinada

JACS Au 2026, in press.

DOI: 10.1021/jacsau.6c00833

3<a id="2024JACS_Au">DFT Study on Retigerane-type Sesterterpenoid Biosynthesis: Initial Conformation of GFPP Regulates Biosynthetic Pathway, Ring-construction Order and Stereochemistry</a>

Yuichiro Watanabe, Takahiro Hashishin, Hajime Sato,* Taro Matsuyama, Masaya Nakajima, Jun-ichi Haruta, Masanobu Uchiyama*

JACS Au, 2024, 4, 3484–3491.

DOI: 10.1021/jacsau.4c00313

4Revision of Peniroquesine Biosynthetic Pathway by Retro-biosynthetic Theoretical Analysis: Ring Strain Controls the Unique Carbocation Rearrangement Cascade

Taro Matsuyama,† Ko Togashi,† Moe Nakano, Hajime Sato,* Masanobu Uchiyama*

JACS Au, 2023, 3, 1596-1603.

DOI: 10.1021/jacsau.3c00039

5Elucidation of Late-stage Biosynthesis of Phomoidride: Proposal of Cyclization Mechanism Affording Characteristic 9-Membered Ring of Fungal Dimeric Anhydride

Shintaro Yamamoto,# Taro Matsuyama,# Taro Ozaki,* Jyunya Takino, Hajime Sato, Masanobu Uchiyama,* Atsushi Minami,* and Hideaki Oikawa

J. Am. Chem. Soc., 2022, 144, 20998-21004. (#: equall contribution)

DOI: 10.1021/jacs.2c09308

6Molecular and Computational Bases for Spirofuranone Formation in Setosusin Biosynthesis

Xingxing Wei, Taro Matsuyama, Hajime Sato,* Dexiu Yan, Pui Man Chan, Kazunori Miyamoto, Masanobu Uchiyama,* and Yudai Matsuda*

J. Am. Chem. Soc., 2021, 143, 17708–17715.

DOI: 10.1021/jacs.1c08336

7DFT Study on the Biosynthesis of Verrucosane Diterpenoids and Mangicol Sesterterpenoids: Involvement of Secondary-carbocation-free Reaction Cascades

Hajime Sato,* Bi-Xiao Li, Taisei Takagi, Chao Wang, Kazunori Miyamoto, and Masanobu Uchiyama*

JACS Au, 2021, 1, 1231–1239.

DOI: 10.1021/jacsau.1c00178

8DFT Study of a Missing Piece in Brasilane-Type Structure Biosynthesis: An Unusual Skeletal Rearrangement

Hajime Sato,* Takahiro Hashishin, Junichiro Kanazawa, Kazunori Miyamoto and Masanobu Uchiyama*

J. Am. Chem. Soc., 2020, 142, 19830–19834.

DOI: 10.1021/jacs.0c09616

9Biosynthesis of Indole Diterpene Lolitrems: Radical‐Induced Cyclization of an Epoxyalcohol Affording a Characteristic Lolitremane Skeleton

Yulu Jiang, Taro Ozaki, Mei Harada, Tadachika Miyasaka, Hajime Sato, Kazunori Miyamoto, Junichiro Kanazawa, Chengwei Liu, Jun-ichi Maruyama, Masaatsu Adachi, Atsuo Nakazaki, Toshio Nishikawa, Masanobu Uchiyama, Atsushi Minami,* Hideaki Oikawa*

Angew. Chem. Int. Ed., 2020, 59, 17996–18002.

DOI: 10.1002/anie.202007280

10Functional Analysis of a Biosynthetic Gene Cluster Demonstrates Role of Spontaneous Double Bicyclo-ring Formation Including 8π–6π Electrocyclization in Shimalactone Biosynthesis

Isao Fujii,* M. H., K. K., A. U., H. S., K. S., H. T., M. I., S. Y., A. K., R. F., A. H., K. S., T. A., J. I., D. W., Y. G., A. Watanabe, M. Watanabe, Y. Masumoto, J. Kanazawa, Hajime Sato, Masanobu Uchiyama*

Angew. Chem. Int. Ed., 2020, 59, 8464–8470.

DOI: 10.1002/anie.202001024

11Computational Studies on Biosynthetic Carbocation Rearrangements leading to Quiannulatene: Initial Conformation Regulates Biosynthetic Route, Stereochemistry, and Type of Skeleton.

Hajime Sato,* Takaaki Mitsuhashi, Mami Yamazaki, Ikuro Abe,* Masanobu Uchiyama*

Angew. Chem. Int. Ed., 2018, 57, 14752–14757.

DOI: 10.1002/anie.201807139

12Structural and Computational Basis for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis.

Yu Nakashima, Takaaki Mitsuhashi, Yudai Mtsuda, Miki Senda, Hajime Sato, Mami Yamazaki, Masanobu Uchiyama,* Toshiya Senda,* Ikuro Abe*

J. Am. Chem. Soc., 2018, 140, 9743–9750.

DOI: 10.1021/jacs.8b06084